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AGROFORESTRY AND PLANT BIOCHEMISTRY, PROTEOMICS AND SYSTEMS BIOLOGY. AGR-164
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Holm oak database
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PUBLICATIONS ABOUT HOLM OAK
Content about Holm Oak (
Quercus ilex
) investigations classified by years. To find a certain document about these investigations, go to Search label.
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— Seleccione año —
2021
2020
2019
2018
2017
2016
2015
2014
2013
2012
2011
2009
2006
2005
— Seleccione autor —
ABDELLY C
ABRIL N
ALMEIDA T
AMIL RUIZ F
ARCHIDONA YUSTE A
ARIZA D
BAAZAOUI N
BIGATTON ED
BUENO MA
CABRERA AG
CANALES BUENO N
CASTILLEJO SÁNCHEZ MA
CHATURVEDI P
CORREIA B
DEL CAMPO A
ECHEVARRIA ZOMENO S
ESCANDÓN M
FERNÁNDEZ I MARTÍ A
FERNANDEZ RG
FUENTES ALMAGRO C
GARCIA OLMO J
GIL PELEGRIN E
GIL SERRANO AM
GÓMEZ DÍAZ C
GÓMEZ GÁLVEZ IM
GONÇALVES S
GONZÁLEZ FERNÁNDEZ R
GUERRERO SÁNCHEZ VM
HAMMAMI S
JORGE I
JORRÍN NOVO JV
LENZ C
LOLI AUSEJO D
LÓPEZ HIDALGO C
MALDONADO ALCONADA AM
MANZANERA JAGOMEZ GARAY A
MEDINA AUÑÓN A
MEIJÓN M
MENÉNDEZ M
NAVARRO CERRILLO RM
PASCUAL J
PEDROSA M
PELEGRIN EG
PINTO G
PINTOS B
PORRAS C
REDONDO LÓPEZ I
REY MD
RIZA D
RODRÍGUEZ DE FRANCISCO LE
ROMERO RODRÍGUEZ MC
RUIZ LAGUNA J
SAN EUFRASIO B
SÁNCHEZ LUCAS R
SANCHEZ N
SGHAIER HAMMAMI B
SIMOVA STOILOVA LP
TRIGUEROS PEÑA M
VALERO GALVÁN J
VALLEDOR L
VERARDI A
— Seleccione palabra clave —
2-DE PROTEOMICS
2-DE-MALDI-TOF/TOF
ABIOTIC STRESS
ACORN PROTEOMICS
ACORNS
ANTHERS
ASSEMBLERS
BIODIVERSITY
BIOMASS
BIOTIC STRESS
CHEMICAL SEEDS COMPOSITION
CHLOROPHYLL FLUORESCENCE
CLASSICAL BIOCHEMISTRY
CLIMATE CHANGE
CLUSTERING ANALYSIS
COMPLEMENTARY PROTEOMICS
CONFIDENCE PARAMETERS
COTYLEDON
CPSSR
CROSS-REACTIVITY
CUSTOM DATABASES
CUSTOM PROTEIN DATABASES
DE NOVO SEQUENCING
DEHESAS
DIFFERENT SEED PARTS
DNA AND RNA EXTRACTION
DROUGHT
DROUGHT STRESS
DROUGHT TOLERANCE
EARLY SEEDLING GROWTH
EMBRYO AXIS
ESTS
FRUIT ALLERGENS
GELC-ORBITRAP/MS
GENE FLOW
GENETIC DIVERGENCE
GENETIC RESOURCES
GENOMIC ANALYSIS
GENOMIC DNA
GEOGRAPHICAL GRADIENTS
GERMINATION
HIGH-QUALITY RNA
HOLM OAK
HOLM OAK DECLINE
HOLM OAK LEAF PROTEOME
HOLM OAK PROTEOME
HOLM OAK PROTEOMICS
HOLM OAK VARIABILITY
ILLUMINA
INTEGRATED ANALYSIS
INTRASPECIFIC VARIATION
INVIABLE SEEDS
LEAF PROTEOME
MASS SPECTROMETRY
MATURE SEED
METABOLOME
MICROSATELLITE DNA-MARKERS
NEAR INFRARED SPECTROSCOPY
NGS
NON-MODEL SPECIES
NON-ORTHODOX SEED
NONTARGETED METABOLOMICS
NSSR
OMICS
ORPHAN SPECIES
PEPTIDE MARKERS
PERLITE
PHOSPHOPROTEOMICS
PHYTOHORMONE
PHYTOPHTHORA CINNAMOMI
PLANT BIODIVERSITY
PLANT PROTEOMICS
PLANT PROTEOTYPING
PLANT STRESS PROTEOMICS
POLLEN EMBRYOGENESIS
POLLEN PROTEOMICS
POLLEN-FRUIT REACTIONS
POPULATION STRUCTURE
POPULATION VARIABILITY
POST TRANSLATIONAL MODIFICATION
PROTEIN DATABASES
PROTEIN IDENTIFICATION
PROTEOME
PROTEOMICS
PROTEOTYPIC PEPTIDE
PROVENANCES VARIABILITY
QUERCUS
QUERCUS ILEX
QUERCUS ILEX LEAVES
QUERCUS ILEX PROTEOMICS
QUERCUS ILEX PROVENANCES
QUERCUS SPP.
QUERCUS SUBER
QUERCUS PROTEOMICS
QUERCUS SEEDS MORPHOMETRY
RECALCITRANT
RECALCITRANT SEEDS
RECOVERY
REHYDRATION
RNA-SEQ ANALYSIS
RNA-SEQUENCING
ROOT
SECONDARY METABOLISM
SECONDARY METABOLITES
SEED DEVELOPMENT
SEED GERMINATION
SEED MATURATION
SELECTED PROGENITORS
SEQUEST
SHOTGUN
SHOTGUN PROTEOMICS
SPECIFIC DATABASE
STRESSES RESPONSES
SYSTEMS BIOLOGY
TANDEM MASS SPECTROMETRY
TARGETED POST-ACQUISITION PROTEOMICS
TRANSCRIPTOME
TWO-DIMENSIONAL GEL ELECTROPHORESIS
URBAN FRUIT TREES
WATER POTENTIAL
Escandón M, Castillejo-Sánchez MA, Jorrín-Novo JV, Rey MD. 2021. Molecular research on stress responses in Quercus spp.: From classical biochemistry to systems biology through omics analysis. Forests 12:364
Valero-Galván J, González-Fernández R, Jorrín-Novo JV. 2021. Interspecific variation between the American Quercus virginiana and Mediterranean Quercus species in terms of seed nutritional composition, phytochemical content, and antioxidant activity. Molecules 26:2351.
San-Eufrasio B, Bigatton ED, Guerrero-Sánchez VM, Chaturvedi P, Jorrín-Novo JV, Rey MD, Castillejo-Sánchez MA. 2021. Proteomics data analysis for the identification of proteins and derived proteotypic peptides of potential use as putative drought tolerance markers for Quercus ilex. International Journal of Molecular Sciences 22:3191
Escandón M, Jorrín-Novo JV, Castillejo-Sánchez MA. 2021. Application and optimization of label-free shotgun approaches in the study of Quercus ilex. Journal of Proteomics 233:104082.
Sghaier-Hammami B, Castillejo-Sánchez MA, Baazaoui N, Jorrín-Novo JV, Escandón M. 2021. GeLC-Orbitrap/MS and 2-DE-MALDI-TOF/TOF comparative proteomics analysis of seed cotyledons from the non-orthodox Quercus ilex tree species. Journal of Proteomics 233:104087
Guerrero-Sánchez VM, Maldonado-Alconada AM, Sánchez-Lucas R, Rey MD. 2020. Specific protein database creation from transcriptomics data in nonmodel species: Holm oak (Quercus ilex L.). In Plant Proteomics: Methods and Protocols (pp. 57-68). Humana, New York, NY
Gómez-Gálvez IM, Sánchez-Lucas R, San-Eufrasio B, Rodríguez de Francisco LE, Maldonado-Alconada AM, Fuentes-Almagro C, Castillejo-Sánchez MA. 2020. Optimizing Shotgun Proteomics Analysis for a Confident Protein Identification and Quantitation in Orphan Plant Species: The Case of Holm Oak (Quercus ilex). In Plant Proteomics: Methods and Protocols (pp. 157-168). Humana, New York, NY
López-Hidalgo C, Trigueros Peña M, Menéndez M, Jorrín-Novo JV. 2020. Phytochemical composition and variability in Quercus ilex acorn morphotypes as determined by NIRS and MS-based approaches. Food Chemistry 338:127803.
Sghaier-Hammami B, Hammami S, Baazaoui N, Gómez-Díaz C, Jorrín-Novo JV. 2020. Dissecting the seed maturation and germination processes in the non-orthodox Quercus ilex species based on protein signatures as revealed by 2-DE coupled to MALDI-TOF/TOF proteomics strategy. International Journal of Molecular Sciences 21:4870.
San-Eufrasio B, Sánchez-Lucas R, López-Hidalgo C, Guerrero-Sánchez VM, Castillejo-Sánchez MA, Maldonado-Alconada AM, Jorrín-Novo JV, Rey MD. 2020. Responses and differences in tolerance to water shortage under climatic dryness conditions in seedlings from Quercus spp. and Andalusian Q. ilex populations. Forests 11:707.
Pedrosa M, Guerrero-Sánchez VM, Canales‐Bueno N, Loli‐Ausejo D, Castillejo-Sánchez MA, Quirce S, Jorrín-Novo JV, Rodríguez‐Perez, R. 2020. Quercus ilex pollen allergen, Que i 1, responsible for pollen food allergy syndrome caused by fruits in Spanish allergic patients. Clinical & Experimental Allergy.
Almeida T, Pinto G, Correia B, Gonçalves S, Meijón M, Escandón M. 2020. In-depth analysis of the Quercus suber metabolome under drought stress and recovery reveals potential key metabolic players. Plant Science 299: 110606.
Rey MD, Castillejo-Sánchez MA, Sánchez-Lucas R, Guerrero-Sánchez VM, López-Hidalgo C, Romero-Rodríguez MC, Valero-Galván J, Sghaier-Hammami B, Simova-Stoilova L, Echevarría-Zomeño S, Jorge I, Gómez-Gálvez IMM, Papa MA, Carvalho K, Rodríguez de Francisco LE, Maldonado-Alconada AM, Valledor-González L, Jorrín-Novo JV. 2019. Proteomics, Holm Oak (Quercus ilex L.) and other recalcitrant and orphan forest tree species: How do they see each other?. International Journal of Molecular Sciences 20:692
Guerrero-Sánchez VM, Maldonado-Alconada AM, Amil-Ruiz F, Verardi A, Jorrín-Novo JV, Rey MD. 2019. Ion Torrent and lllumina, two complementary RNA-seq platforms for constructing the holm oak (Quercus ilex) transcriptome. PLoS ONE 14:e0210356.
Romero-Rodríguez MC, Jorrín-Novo JV, Castillejo-Sánchez MA. 2019. Toward characterizing germination and early growth in the non-orthodox forest tree species Quercus ilex through complementary gel and gel-free proteomic analysis of embryo and seedlings. Journal of Proteomics 197:60-70.
Romero-Rodríguez MC, Archidona-Yuste A, Abril N, Gil-Serrano AM, Meijón M, Jorrín-Novo JV. 2018. Germination and early seedling development in Quercus ilex recalcitrant and non-dormant seeds: Targeted transcriptional, hormonal, and sugar analysis. Frontiers in Plant Sciences 9:1508.
López-Hidalgo C, Guerrero-Sánchez VM, Gómez-Gálvez IM, Sánchez-Lucas R, Castillejo-Sánchez MA, Maldonado-Alconada AM, Valledor-González L, Jorrín-Novo JV. 2018. A multi-omics analysis pipeline for the metabolic pathway reconstruction in the orphan species Quercus ilex. Frontiers in Plant Sciences 9:935.
Fernández i Martí A, Romero-Rodríguez MC, Navarro-Cerrillo RM, Abril N, Jorrín-Novo JV. 2018. Population genetic diversity of Quercus ilex subsp. ballota (Desf.) Samp. reveals divergence in recent and evolutionary migration rates in the Spanish Dehesas. Forests 9:337
Simova-Stoilova LP, López-Hidalgo C, Sánchez-Lucas R, Valero-Galván J, Romero-Rodríguez MC, Jorrín-Novo JV. 2018. Holm oak proteomic response to water limitation at seedling establishment stage reveals specific changes in different plant parts as well as interaction between roots and cotyledons. Plant Science 276:1-13.
Guerrero-Sánchez VM, Maldonado-Alconada AM, Amil-Ruiz F & Jorrín-Novo JV. 2017. Holm oak (Quercus ilex) Transcriptome. De novo Sequencing and Assembly Analysis. Frontiers in Molecular Biosciences 4:70
Sghaier-Hammami B, Redondo-López I, Valero-Galván J, Jorrín-Novo JV. 2016. Protein profile of cotyledon, tegument, and embryonic axis of mature acorns from a non-orthodox plant species: Quercus ilex. Planta 243:369-396
Romero-Rodríguez MC, Abril N, Sánchez-Lucas R, Jorrín-Novo JV. 2015. Multiplex staining of 2-DE gels for an initial phosphoproteome analysis of germinating seeds and early grown seedlings from a non-orthodox spp.: Quercus ilex L. subsp. ballota [Desf.] Samp. Frontiers in Plant Science 6:620
Simova-Stoilova LP, Romero-Rodríguez MC, Sánchez-Lucas R, Navarro-Cerrillo RM, Medina-Auñón A, Jorrín-Novo JV. 2015. 2-DE proteomics analysis of drought treated seedlings of Quercus ilex supports a root active strategy for metabolic adaptation in response to water shortage. Frontiers in Plant Science 6:627
Jorrin-Novo JV & Navarro-Cerrillo RM (2014). Variability and response to different stresses in Andalusia Holm oak (
Quercus ilex
L.) populations by a proteomic approach. Ecosistemas 23(2): 99-107
Romero-Rodriguez MC, Pascual J, Valledor L & Jorrin-Novo JV (2014). Improving the quality of protein identification in non-model species. Characterization of
Quercus ilex
seed and
Pinus radiata
needle proteomes by using SEQUEST and custom databases. Journal of proteomics, 105, 85-91
Valero-Galvan J, Fernandez RG, Valledor L, Navarro-Cerrillo RM & Jorrin-Novo JV (2014). Proteotyping of Holm Oak (
Quercus ilex
subsp. ballota) Provenances Through Proteomic Analysis of Acorn Flour. Plant Proteomics: Methods and Protocols, 709-723
Valero-Galvan J, Gonzalez-Fernandez R, Navarro-Cerrillo RM, Gil-Pelegrin E & Jorrin-Novo JV (2013). Physiological and proteomic analyses of drought stress response in Holm oak provenances. Journal of proteome research, 12(11), 5110-5123
Pintos B, Sanchez N, Bueno MA, Navarro-Cerrillo RM, Jorrin JV, Manzanera JA & Gomez-Garay, A. (2013). Induction of
Quercus ilex
L. haploid and doubled-haploid embryos from anther cultures by temperature-stress. Silvae Genetica, 62(1-6), 210-217
Sghaier-Hammami B, Valero-Galvan J, Romero-Rodriguez MC, Navarro-Cerrillo RM, Abdelly C, & Jorrin-Novo JV (2013). Physiological and proteomics analyses of Holm oak (
Quercus ilex
subsp. ballota [Desf.] Samp.) responses to
Phytophthora cinnamomi
. Plant physiology and biochemistry, 71, 191-202
Valero-Galvan J, Valledor L., Fernandez RG, Cerrillo RMN & Jorrin-Novo JV (2012). Proteomic analysis of Holm oak (
Quercus ilex
subsp. ballota [Desf.] Samp.) pollen. Journal of proteomics, 75(9), 2736-2744
Echevarria-Zomeno S, Abril N, Ruiz-Laguna J, Jorrin-Novo JV & Maldonado-Alconada AM (2012). Simple, rapid and reliable methods to obtain high quality RNA and genomic DNA from Quercus ilex L. leaves suitable for molecular biology studies. Acta physiologiae plantarum, 34(2), 793-805
Valero-Galvan J, Jorrin-Novo JV, Cabrera AG, Ariza D, Garcia-Olmo J & Cerrillo RMN (2012). Population variability based on the morphometry and chemical composition of the acorn in Holm oak (
Quercus ilex
subsp. ballota [Desf.] Samp.). European Journal of forest research, 131(4), 893-904
Valero-Galvan J, Valledor L, Cerrillo RMN, Pelegrin EG & Jorrin-Novo JV (2011). Studies of variability in Holm oak (
Quercus ilex
subsp. ballota [Desf.] Samp.) through acorn protein profile analysis. Journal of proteomics, 74(8), 1244-1255
Echevarria-Zomeno S, Ariza D, Jorge I, Lenz C, Del Campo A, Jorrin JV & Navarro RM (2009). Changes in the protein profile of
Quercus ilex
leaves in response to drought stress and recovery. Journal of plant physiology, 166(3), 233-245
Jorge I, Navarro-Cerrillo RM, Lenz C, Ariza D, Jorrin-Novo JV (2006) Variation in the Holm oak leaf proteome at different plant developmental stages, between provenances and in response to drought stress. Proteomics 6: S207-214
Jorge I, Navarro-Cerrillo RM, Lenz C, riza D, Porras C, Jorrin-Novo JV (2005) The Holm Oak leaf proteome: Analytical and biological variability in the protein expression level assessed by 2-DE and protein identification tandem mass spectrometryde novo sequencing and sequence similarity searching. Proteomics 5: 222-234